IL_5T2C_052
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5T2C|1|A|G|1625, 5T2C|1|A|A|1637, 5T2C|1|A|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_052 not in the Motif Atlas
- Geometric match to IL_7A0S_021
- Geometric discrepancy: 0.1782
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
5T2C|1|A|G|1624
5T2C|1|A|G|1625
5T2C|1|A|G|1626
*
5T2C|1|A|U|1636
5T2C|1|A|A|1637
5T2C|1|A|A|1638
5T2C|1|A|U|1639
5T2C|1|A|C|1640
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L37
- Chain t
- 60S ribosomal protein L15
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