IL_5T2C_062
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 5T2C|1|A|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_062 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1739
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
5T2C|1|A|U|1905
5T2C|1|A|U|1906
5T2C|1|A|A|1907
5T2C|1|A|A|1908
5T2C|1|A|G|1909
*
5T2C|1|A|C|2067
5T2C|1|A|C|2068
5T2C|1|A|A|2069
5T2C|1|A|U|2070
5T2C|1|A|A|2071
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 60S ribosomal protein L18
- Chain Y
- 60S ribosomal protein L32
- Chain Z
- 60S ribosomal protein L35a
- Chain m
- 60S ribosomal protein L7
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