IL_5T2C_084
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 5T2C|1|A|U|2661, 5T2C|1|A|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_084 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.2038
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T2C|1|A|U|2656
5T2C|1|A|G|2657
5T2C|1|A|G|2658
5T2C|1|A|A|2659
5T2C|1|A|A|2660
5T2C|1|A|U|2661
5T2C|1|A|G|2662
*
5T2C|1|A|C|2672
5T2C|1|A|G|2673
5T2C|1|A|A|2674
5T2C|1|A|G|2675
5T2C|1|A|A|2676
5T2C|1|A|G|2677
5T2C|1|A|A|2678
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain AN
- 40S ribosomal protein S13
- Chain L
- 60S ribosomal protein L19
- Chain T
- 60S ribosomal protein L27
- Chain W
- 60S ribosomal protein L30
- Chain a
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37a
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