IL_5T2C_089
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5T2C|1|A|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_089 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1144
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
5T2C|1|A|C|2867
5T2C|1|A|G|2868
5T2C|1|A|U|2869
5T2C|1|A|A|2870
5T2C|1|A|A|2871
5T2C|1|A|C|2872
*
5T2C|1|A|G|2877
5T2C|1|A|G|2878
5T2C|1|A|A|2879
5T2C|1|A|U|2880
5T2C|1|A|A|2881
5T2C|1|A|A|2882
5T2C|1|A|G|2883
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- 60S Ribosomal protein L41
- Chain j
- 60S ribosomal protein L37a
Coloring options: