IL_5T2C_096

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5T2C|1|A|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_096 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.2803

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

5T2C|1|A|U|3704
5T2C|1|A|G|3705
*
5T2C|1|A|U|3745
5T2C|1|A|A|3746
5T2C|1|A|A|3747
5T2C|1|A|A|3748

Current chains

Chain A

28S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

60S ribosomal protein L8