IL_5T2C_098

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5T2C|1|A|A|3785, 5T2C|1|A|C|3791, 5T2C|1|A|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_098 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1542

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5T2C|1|A|C|3781
5T2C|1|A|C|3782
5T2C|1|A|A|3783
5T2C|1|A|A|3784
5T2C|1|A|A|3785
5T2C|1|A|U|3786
5T2C|1|A|G|3787
5T2C|1|A|C|3788
5T2C|1|A|C|3789
5T2C|1|A|U|3790
5T2C|1|A|C|3791
5T2C|1|A|G|3792
*
5T2C|1|A|C|3808
5T2C|1|A|G|3809
5T2C|1|A|C|3810
5T2C|1|A|G|3811

Current chains

Chain A

28S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain h

60S Ribosomal protein L41