IL_5T2C_099

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_099 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.1762

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|G|3895
5T2C|1|A|C|3896
5T2C|1|A|G|3897
5T2C|1|A|G|3898
*
5T2C|1|A|U|4563
5T2C|1|A|A|4564
5T2C|1|A|C|4565

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a