IL_5T2C_108

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

5T2C|1|A|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_108 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2763

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5T2C|1|A|G|4291
5T2C|1|A|A|4292
5T2C|1|A|U|4293
5T2C|1|A|C|4294
*
5T2C|1|A|G|4316
5T2C|1|A|A|4317
5T2C|1|A|C|4318

Current chains

Chain A

28S rRNA

Nearby chains

Chain N

60S ribosomal protein L21

Chain V

60S ribosomal protein L29

Chain i

60S ribosomal protein L36a