IL_5T2C_134

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCCCCC*GGGUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_134 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3581

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5T2C|1|A|G|4768
5T2C|1|A|G|4769
5T2C|1|A|U|4770
5T2C|1|A|C|4771
5T2C|1|A|C|4772
5T2C|1|A|C|4773
5T2C|1|A|C|4774
5T2C|1|A|C|4775
*
5T2C|1|A|G|4861
5T2C|1|A|G|4862
5T2C|1|A|G|4863
5T2C|1|A|U|4864
5T2C|1|A|C|4865
5T2C|1|A|C|4866

Current chains

Chain A

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L13a

Chain o

60S ribosomal protein L9