IL_5T2C_143

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_143 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.2361

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5T2C|1|A|A|5014
5T2C|1|A|G|5015
5T2C|1|A|A|5016
5T2C|1|A|G|5017
*
5T2C|1|A|C|5032
5T2C|1|A|G|5033
5T2C|1|A|A|5034
5T2C|1|A|U|5035

Current chains

Chain A

28S rRNA

Nearby chains

Chain Au

40S ribosomal protein S8

Chain L

60S ribosomal protein L19