IL_5T2C_150

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

5T2C|1|AA|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_150 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3498

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5T2C|1|AA|G|108
5T2C|1|AA|U|109
5T2C|1|AA|U|110
5T2C|1|AA|A|111
5T2C|1|AA|U|112
5T2C|1|AA|G|113
5T2C|1|AA|G|114
5T2C|1|AA|U|115
*
5T2C|1|AA|A|348
5T2C|1|AA|A|349
5T2C|1|AA|C|350
5T2C|1|AA|G|351
5T2C|1|AA|U|352
5T2C|1|AA|C|353

Current chains

Chain AA

18S rRNA

Nearby chains

Chain Ar

40S ribosomal protein S4, X isoform

Chain Au

40S ribosomal protein S8

Chain Aw

40S ribosomal protein S11