IL_5T2C_152

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGUGG*CUAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_152 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3784

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5T2C|1|AA|C|151
5T2C|1|AA|U|152
5T2C|1|AA|G|153
5T2C|1|AA|U|154
5T2C|1|AA|G|155
5T2C|1|AA|G|156
*
5T2C|1|AA|C|162
5T2C|1|AA|U|163
5T2C|1|AA|A|164
5T2C|1|AA|G|165
5T2C|1|AA|A|166
5T2C|1|AA|G|167

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S6

Chain AQ

40S ribosomal protein S24