IL_5T2C_173
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAUU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_173 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2619
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5T2C|1|AA|G|942
5T2C|1|AA|U|943
5T2C|1|AA|A|944
5T2C|1|AA|U|945
5T2C|1|AA|U|946
*
5T2C|1|AA|A|980
5T2C|1|AA|A|981
5T2C|1|AA|G|982
5T2C|1|AA|A|983
5T2C|1|AA|C|984
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AE
- 40S ribosomal protein S26
- Chain AO
- 40S ribosomal protein S14
- Chain Ap
- 40S ribosomal protein S3a
- Chain D
- 60S ribosomal protein L8
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