IL_5T2C_180
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUAUGG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_180 not in the Motif Atlas
- Geometric match to IL_6CZR_146
- Geometric discrepancy: 0.1707
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5T2C|1|AA|G|1168
5T2C|1|AA|G|1169
5T2C|1|AA|A|1170
5T2C|1|AA|G|1171
5T2C|1|AA|U|1172
5T2C|1|AA|A|1173
5T2C|1|AA|U|1174
5T2C|1|AA|G|1175
5T2C|1|AA|G|1176
*
5T2C|1|AA|C|1185
5T2C|1|AA|U|1186
5T2C|1|AA|G|1187
5T2C|1|AA|A|1188
5T2C|1|AA|A|1189
5T2C|1|AA|A|1190
5T2C|1|AA|C|1191
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 40S ribosomal protein S23
- Chain h
- 60S Ribosomal protein L41
Coloring options: