IL_5T2C_181

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5T2C|1|AA|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_181 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.362

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5T2C|1|AA|G|1203
5T2C|1|AA|A|1204
5T2C|1|AA|C|1205
*
5T2C|1|AA|G|1693
5T2C|1|AA|U|1694
5T2C|1|AA|A|1695
5T2C|1|AA|C|1696

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S26

Chain AJ

40S ribosomal protein S2