IL_5T2C_188

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_188 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3022

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5T2C|1|AA|C|1363
5T2C|1|AA|U|1364
5T2C|1|AA|G|1365
5T2C|1|AA|G|1366
*
5T2C|1|AA|C|1373
5T2C|1|AA|C|1374
5T2C|1|AA|G|1375

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S26

Chain Ao

40S ribosomal protein SA

Chain Az

40S ribosomal protein S17