IL_5T2C_210

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGG*CCGCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_210 not in the Motif Atlas

Homologous match to IL_8C3A_018

Geometric discrepancy: 0.4893

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5T2C|1|A|C|459
5T2C|1|A|C|460
5T2C|1|A|G|461
5T2C|1|A|G|462
*
5T2C|1|A|C|693
5T2C|1|A|C|694
5T2C|1|A|G|695
5T2C|1|A|C|696
5T2C|1|A|G|697

Current chains

Chain A

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L6

Chain k

60S ribosomal protein L28