IL_5T2C_221
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 5T2C|1|A|C|1935, 5T2C|1|A|A|2041, 5T2C|1|A|U|2044, 5T2C|1|A|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2C_221 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.152
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T2C|1|A|G|1933
5T2C|1|A|A|1934
5T2C|1|A|C|1935
5T2C|1|A|C|1936
5T2C|1|A|C|1937
5T2C|1|A|C|1938
5T2C|1|A|A|1939
5T2C|1|A|G|1940
5T2C|1|A|A|1941
5T2C|1|A|A|1942
5T2C|1|A|A|1943
5T2C|1|A|A|1944
*
5T2C|1|A|U|2038
5T2C|1|A|G|2039
5T2C|1|A|A|2040
5T2C|1|A|A|2041
5T2C|1|A|A|2042
5T2C|1|A|A|2043
5T2C|1|A|U|2044
5T2C|1|A|G|2045
5T2C|1|A|G|2046
5T2C|1|A|A|2047
5T2C|1|A|U|2048
5T2C|1|A|G|2049
5T2C|1|A|G|2050
5T2C|1|A|C|2051
5T2C|1|A|G|2052
5T2C|1|A|C|2053
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L13a
- Chain Z
- 60S ribosomal protein L35a
- Chain g
- Ubiquitin-60S ribosomal protein L40
- Chain p
- 60S ribosomal protein L10-like
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