IL_5T2C_230

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_230 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1476

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5T2C|1|A|G|4400
5T2C|1|A|G|4401
5T2C|1|A|C|4402
5T2C|1|A|U|4403
*
5T2C|1|A|G|4440
5T2C|1|A|A|4441
5T2C|1|A|U|4442
5T2C|1|A|C|4443
5T2C|1|A|C|4444

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain V

60S ribosomal protein L29

Chain p

60S ribosomal protein L10-like