IL_5T2C_270

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2C_270 not in the Motif Atlas

Geometric match to IL_8C3A_474

Geometric discrepancy: 0.2247

The information below is about IL_8C3A_474

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

5T2C|1|AA|G|10
5T2C|1|AA|A|11
5T2C|1|AA|U|12
*
5T2C|1|AA|A|1199
5T2C|1|AA|A|1200
5T2C|1|AA|U|1201

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S26

Chain AJ

40S ribosomal protein S2