IL_5T62_006
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_006 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.0684
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|C|82
5T62|1|A|U|83
5T62|1|A|U|84
5T62|1|A|A|85
5T62|1|A|G|86
5T62|1|A|U|87
5T62|1|A|A|88
5T62|1|A|A|89
*
5T62|1|A|U|97
5T62|1|A|G|98
5T62|1|A|A|99
5T62|1|A|A|100
5T62|1|A|G|101
5T62|1|A|C|102
5T62|1|A|G|103
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain a
- 60S ribosomal protein L15-A
- Chain d
- 60S ribosomal protein L18-A
- Chain n
- 60S ribosomal protein L28
Coloring options: