IL_5T62_021

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

5T62|1|A|U|534, 5T62|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.2152

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5T62|1|A|G|531
5T62|1|A|A|532
5T62|1|A|A|533
5T62|1|A|U|534
5T62|1|A|G|535
5T62|1|A|U|536
5T62|1|A|A|537
5T62|1|A|G|538
*
5T62|1|A|U|553
5T62|1|A|A|554
5T62|1|A|U|555
5T62|1|A|U|556
5T62|1|A|A|557
5T62|1|A|U|558
5T62|1|A|A|559
5T62|1|A|G|560
5T62|1|A|C|561

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L20-A