IL_5T62_024
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_024 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2511
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|G|725
5T62|1|A|G|726
5T62|1|A|G|727
5T62|1|A|G|728
5T62|1|A|C|729
*
5T62|1|A|G|740
5T62|1|A|U|741
5T62|1|A|G|742
5T62|1|A|C|743
5T62|1|A|A|744
5T62|1|A|C|745
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain d
- 60S ribosomal protein L18-A
- Chain o
- 60S ribosomal protein L29
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