IL_5T62_039
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T62_039 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.0881
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T62|1|A|G|991
5T62|1|A|A|992
5T62|1|A|G|993
5T62|1|A|G|994
5T62|1|A|U|995
5T62|1|A|A|996
5T62|1|A|A|997
*
5T62|1|A|U|1052
5T62|1|A|A|1053
5T62|1|A|A|1054
5T62|1|A|A|1055
5T62|1|A|U|1056
5T62|1|A|A|1057
5T62|1|A|U|1058
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L10
- Chain g
- 60S ribosomal protein L21-A
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