IL_5T62_055

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5T62|1|A|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_055 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5625

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5T62|1|A|G|1234
5T62|1|A|U|1235
5T62|1|A|G|1236
5T62|1|A|G|1237
5T62|1|A|C|1238
*
5T62|1|A|G|1250
5T62|1|A|A|1251
5T62|1|A|A|1252
5T62|1|A|U|1253
5T62|1|A|C|1254

Current chains

Chain A

25S Ribosomal RNA

Nearby chains