IL_5T62_065

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

5T62|1|A|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T62_065 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.281

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5T62|1|A|U|1627
5T62|1|A|C|1628
5T62|1|A|U|1629
5T62|1|A|U|1630
5T62|1|A|C|1631
*
5T62|1|A|G|1811
5T62|1|A|G|1812
5T62|1|A|A|1813
5T62|1|A|A|1814
5T62|1|A|U|1815
5T62|1|A|A|1816

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain m

60S ribosomal protein L27-A