IL_5T6R_019

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

5T6R|1|A|U|534, 5T6R|1|A|U|558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_019 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1963

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5T6R|1|A|G|531
5T6R|1|A|A|532
5T6R|1|A|A|533
5T6R|1|A|U|534
5T6R|1|A|G|535
5T6R|1|A|U|536
5T6R|1|A|A|537
5T6R|1|A|G|538
*
5T6R|1|A|U|553
5T6R|1|A|A|554
5T6R|1|A|U|555
5T6R|1|A|U|556
5T6R|1|A|A|557
5T6R|1|A|U|558
5T6R|1|A|A|559
5T6R|1|A|G|560
5T6R|1|A|C|561

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L20-A