IL_5T6R_115
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_115 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.0976
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5T6R|1|A|C|3018
5T6R|1|A|U|3019
5T6R|1|A|U|3020
5T6R|1|A|A|3021
5T6R|1|A|G|3022
5T6R|1|A|U|3023
5T6R|1|A|A|3024
5T6R|1|A|C|3025
*
5T6R|1|A|G|3030
5T6R|1|A|G|3031
5T6R|1|A|A|3032
5T6R|1|A|A|3033
5T6R|1|A|C|3034
5T6R|1|A|A|3035
5T6R|1|A|G|3036
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain K
- 60S ribosomal protein L9-A
- Chain i
- 60S ribosomal protein L23-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
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