IL_5T6R_116
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 5T6R|1|A|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T6R_116 not in the Motif Atlas
- Homologous match to IL_5TBW_117
- Geometric discrepancy: 0.1013
- The information below is about IL_5TBW_117
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5T6R|1|A|U|3047
5T6R|1|A|A|3048
5T6R|1|A|A|3049
5T6R|1|A|U|3050
5T6R|1|A|U|3051
*
5T6R|1|A|A|3091
5T6R|1|A|C|3092
5T6R|1|A|C|3093
5T6R|1|A|A|3094
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain i
- 60S ribosomal protein L23-A
- Chain j
- 60S ribosomal protein L24-A
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