IL_5T6R_164

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T6R_164 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.1875

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5T6R|1|A|A|3342
5T6R|1|A|G|3343
5T6R|1|A|A|3344
5T6R|1|A|G|3345
*
5T6R|1|A|C|3360
5T6R|1|A|G|3361
5T6R|1|A|A|3362
5T6R|1|A|U|3363

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L22-A