IL_5T7V_106

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_106 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3999

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5T7V|1|B|G|1877
5T7V|1|B|U|1878
5T7V|1|B|U|1879
5T7V|1|B|A|1880
5T7V|1|B|A|1881
5T7V|1|B|G|1882
*
5T7V|1|B|C|1914
5T7V|1|B|G|1915
5T7V|1|B|A|1916
5T7V|1|B|A|1917
5T7V|1|B|G|1918
5T7V|1|B|C|1919

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA