IL_5T7V_128

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5T7V|1|B|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_128 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1774

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5T7V|1|B|U|2549
5T7V|1|B|G|2550
*
5T7V|1|B|C|2567
5T7V|1|B|A|2568
5T7V|1|B|A|2569
5T7V|1|B|G|2570

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LM

50S ribosomal protein L13