IL_5T7V_136

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUU*AAUAC

Length

9 nucleotides

Bulged bases

5T7V|1|B|A|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_136 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3257

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5T7V|1|B|G|2858
5T7V|1|B|G|2859
5T7V|1|B|U|2860
5T7V|1|B|U|2861
*
5T7V|1|B|A|2896
5T7V|1|B|A|2897
5T7V|1|B|U|2898
5T7V|1|B|A|2899
5T7V|1|B|C|2900

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LC

50S ribosomal protein L3

Chain LQ

50S ribosomal protein L17