IL_5TBW_156

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5TBW|1|A|C|114, 5TBW|1|A|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_156 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.0799

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5TBW|1|A|U|113
5TBW|1|A|C|114
5TBW|1|A|G|115
5TBW|1|A|U|116
*
5TBW|1|A|A|300
5TBW|1|A|A|301

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A