IL_5TBW_179
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 5TBW|1|A|A|619, 5TBW|1|A|A|620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TBW_179 not in the Motif Atlas
- Geometric match to IL_4V88_416
- Geometric discrepancy: 0.0601
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
5TBW|1|A|G|616
5TBW|1|A|U|617
5TBW|1|A|U|618
5TBW|1|A|A|619
5TBW|1|A|A|620
5TBW|1|A|A|621
5TBW|1|A|A|622
*
5TBW|1|A|U|1104
5TBW|1|A|C|1105
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Y
- 40S ribosomal protein S23-A
- Chain b
- 40S ribosomal protein S26-B
Coloring options: