IL_5TBW_196

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_196 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1579

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5TBW|1|A|C|990
5TBW|1|A|G|991
5TBW|1|A|A|992
5TBW|1|A|A|993
5TBW|1|A|G|994
*
5TBW|1|A|C|1010
5TBW|1|A|G|1011
5TBW|1|A|U|1012
5TBW|1|A|A|1013
5TBW|1|A|G|1014

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

40S ribosomal protein S14-B

Chain b

40S ribosomal protein S26-B

Chain j

60S ribosomal protein L2-A