IL_5TBW_408

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

5TBW|1|sR|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_408 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0452

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5TBW|1|sR|C|443
5TBW|1|sR|C|444
5TBW|1|sR|A|445
5TBW|1|sR|A|446
5TBW|1|sR|U|447
5TBW|1|sR|C|448
*
5TBW|1|sR|G|458
5TBW|1|sR|G|459
5TBW|1|sR|A|460
5TBW|1|sR|G|461

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A