IL_5TBW_413

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5TBW|1|sR|A|579, 5TBW|1|sR|U|581, 5TBW|1|sR|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_413 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.0703

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5TBW|1|sR|G|562
5TBW|1|sR|U|563
5TBW|1|sR|G|564
5TBW|1|sR|C|565
5TBW|1|sR|C|566
5TBW|1|sR|A|567
5TBW|1|sR|G|568
*
5TBW|1|sR|C|575
5TBW|1|sR|G|576
5TBW|1|sR|G|577
5TBW|1|sR|U|578
5TBW|1|sR|A|579
5TBW|1|sR|A|580
5TBW|1|sR|U|581
5TBW|1|sR|U|582
5TBW|1|sR|C|583

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s3

40S ribosomal protein S3