IL_5TCU_006

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

5TCU|1|A|A|129, 5TCU|1|A|A|130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_006 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.246

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5TCU|1|A|U|128
5TCU|1|A|A|129
5TCU|1|A|A|130
5TCU|1|A|C|131
*
5TCU|1|A|G|239
5TCU|1|A|A|240

Current chains

Chain A

16S RRNA

Nearby chains

Chain S7

30S ribosomal protein S16

Chain S8

30S ribosomal protein S17

Chain SA

30S ribosomal protein S20