IL_5TCU_010
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUUAG*CAACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5TCU|1|A|U|252, 5TCU|1|A|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_010 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1889
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5TCU|1|A|C|250
5TCU|1|A|A|251
5TCU|1|A|U|252
5TCU|1|A|U|253
5TCU|1|A|A|254
5TCU|1|A|G|255
*
5TCU|1|A|C|285
5TCU|1|A|A|286
5TCU|1|A|A|287
5TCU|1|A|C|288
5TCU|1|A|G|289
5TCU|1|A|A|290
5TCU|1|A|U|291
5TCU|1|A|G|292
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain S3
- 30S ribosomal protein S12
- Chain S8
- 30S ribosomal protein S17
Coloring options: