IL_5TCU_013

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

5TCU|1|A|U|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_013 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.28

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5TCU|1|A|U|375
5TCU|1|A|U|376
5TCU|1|A|C|377
*
5TCU|1|A|G|400
5TCU|1|A|A|401

Current chains

Chain A

16S RRNA

Nearby chains

Chain S7

30S ribosomal protein S16