IL_5TCU_015

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGGC*GCCUGA

Length

11 nucleotides

Bulged bases

5TCU|1|A|G|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_015 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3946

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5TCU|1|A|U|383
5TCU|1|A|G|384
5TCU|1|A|G|385
5TCU|1|A|G|386
5TCU|1|A|C|387
*
5TCU|1|A|G|392
5TCU|1|A|C|393
5TCU|1|A|C|394
5TCU|1|A|U|395
5TCU|1|A|G|396
5TCU|1|A|A|397

Current chains

Chain A

16S RRNA

Nearby chains

Chain S7

30S ribosomal protein S16