IL_5TCU_032
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUACGA*UUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_032 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.22
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5TCU|1|A|G|897
5TCU|1|A|G|898
5TCU|1|A|A|899
5TCU|1|A|G|900
5TCU|1|A|U|901
5TCU|1|A|A|902
5TCU|1|A|C|903
5TCU|1|A|G|904
5TCU|1|A|A|905
*
5TCU|1|A|U|914
5TCU|1|A|U|915
5TCU|1|A|G|916
5TCU|1|A|A|917
5TCU|1|A|A|918
5TCU|1|A|A|919
5TCU|1|A|C|920
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain S3
- 30S ribosomal protein S12
Coloring options: