IL_5TCU_041

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

5TCU|1|A|C|1211, 5TCU|1|A|A|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_041 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1552

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5TCU|1|A|G|1069
5TCU|1|A|G|1070
*
5TCU|1|A|U|1210
5TCU|1|A|C|1211
5TCU|1|A|A|1212
5TCU|1|A|U|1213
5TCU|1|A|C|1214

Current chains

Chain A

16S RRNA

Nearby chains

Chain S1

30S ribosomal protein S10

Chain S5

30S ribosomal protein S14 type Z

Chain SB

30S ribosomal protein S3