IL_5TCU_043

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_043 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1519

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

5TCU|1|A|G|1073
5TCU|1|A|U|1074
5TCU|1|A|C|1075
*
5TCU|1|A|G|1204
5TCU|1|A|U|1205
5TCU|1|A|C|1206

Current chains

Chain A

16S RRNA

Nearby chains

Chain S1

30S ribosomal protein S10

Chain SB

30S ribosomal protein S3

Chain SD

30S ribosomal protein S5