IL_5TCU_044

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCUU*AGUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_044 not in the Motif Atlas

Geometric match to IL_8C3A_102

Geometric discrepancy: 0.384

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|A|A|1130
5TCU|1|A|G|1131
5TCU|1|A|C|1132
5TCU|1|A|U|1133
5TCU|1|A|U|1134
*
5TCU|1|A|A|1163
5TCU|1|A|G|1164
5TCU|1|A|U|1165
5TCU|1|A|U|1166

Current chains

Chain A

16S RRNA

Nearby chains

Chain S1

30S ribosomal protein S10

Chain S5

30S ribosomal protein S14 type Z

Chain SH

30S ribosomal protein S9