IL_5TCU_050

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5TCU|1|A|C|1411, 5TCU|1|A|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_050 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2842

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|A|C|1410
5TCU|1|A|C|1411
5TCU|1|A|G|1412
*
5TCU|1|A|C|1513
5TCU|1|A|A|1514
5TCU|1|A|A|1515
5TCU|1|A|G|1516

Current chains

Chain A

16S RRNA

Nearby chains

Chain E

Transfer RNA; tRNA

Chain SD

30S ribosomal protein S5

Chain X

mRNA