IL_5TCU_051

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_051 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2095

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5TCU|1|A|G|1412
5TCU|1|A|C|1413
5TCU|1|A|C|1414
5TCU|1|A|C|1415
*
5TCU|1|A|G|1509
5TCU|1|A|U|1510
5TCU|1|A|A|1511
5TCU|1|A|A|1512
5TCU|1|A|C|1513

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

Transfer RNA; tRNA

Chain X

mRNA