IL_5TCU_053

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_053 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2022

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5TCU|1|A|C|1418
5TCU|1|A|A|1419
5TCU|1|A|C|1420
*
5TCU|1|A|G|1503
5TCU|1|A|A|1504
5TCU|1|A|A|1505
5TCU|1|A|G|1506

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain S3

30S ribosomal protein S12

Chain X

mRNA