IL_5TCU_058

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_058 not in the Motif Atlas

Geometric match to IL_7RQB_074

Geometric discrepancy: 0.3171

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5TCU|1|A|C|1442
5TCU|1|A|G|1443
5TCU|1|A|A|1444
5TCU|1|A|A|1445
5TCU|1|A|G|1446
*
5TCU|1|A|C|1478
5TCU|1|A|G|1479
5TCU|1|A|A|1480
5TCU|1|A|A|1481
5TCU|1|A|G|1482

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain L1

50S ribosomal protein L19

Chain LN

50S ribosomal protein L14